Populate haplotypes in pedigrees (custom founder types).

Populate haplotypes from founder and down in all pedigrees. All founders get a haplotype from calling the user provided function get_founder_haplotype() that must return a vector of TRUE/FALSE values.

pedigrees_all_populate_haplotypes_custom_founders(pedigrees,
  mutation_rates, get_founder_haplotype = NULL, progress = TRUE)

Arguments

pedigrees	Pedigree list in which to populate haplotypes
mutation_rates	Vector with mutation rates
get_founder_haplotype	Function taking no arguments returning a haplotype, i.e. a logical vector (TRUE/FALSE values) of length length(mutation_rates)
progress	Show progress

Details

Note, that pedigrees must first have been inferred by build_pedigrees().

See also

pedigrees_all_populate_haplotypes().